Gene expression in Rhizoglomus irregulare at two different time points of mycorrhiza establishment in Helianthus annuus roots, as revealed by RNA-seq analysis.
Identifieur interne : 000155 ( Main/Exploration ); précédent : 000154; suivant : 000156Gene expression in Rhizoglomus irregulare at two different time points of mycorrhiza establishment in Helianthus annuus roots, as revealed by RNA-seq analysis.
Auteurs : Alberto Vangelisti [Italie] ; Alessandra Turrini [Italie] ; Cristiana Sbrana [Italie] ; Luciano Avio [Italie] ; Tommaso Giordani [Italie] ; Lucia Natali [Italie] ; Manuela Giovannetti [Italie] ; Andrea Cavallini [Italie]Source :
- Mycorrhiza [ 1432-1890 ] ; 2020.
Descripteurs français
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English descriptors
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- MESH :
Abstract
Arbuscular mycorrhizal fungi (AMF) play a fundamental role in plant growth and nutrition in natural and agricultural ecosystems. Despite the importance of such symbionts, the different developmental changes occurring during the AMF life cycle have not been fully elucidated at the molecular level. Here, the RNA-seq approach was used to investigate Rhizoglomus irregulare specific and common transcripts at two different time points of mycorrhizal establishment in Helianthus annuus in vivo. Four days after inoculation, transcripts related to cellular remodeling (actin and tubulin), cellular signaling (calmodulin, serine/threonine protein kinase, 14-3-3 protein, and calcium transporting ATPase), lipid metabolism (fatty acid desaturation, steroid hormone, and glycerophospholipid biosynthesis), and biosynthetic processes were detected. In addition to such transcripts, 16 days after inoculation, expressed genes linked to binding and catalytic activities; ion (K+, Ca2+, Fe2+, Zn2+, Mn2+, Pi, ammonia), sugar, and lipid transport; and those involved in vacuolar polyphosphate accumulation were found. Knowledge of transcriptomic changes required for symbiosis establishment and performance is of great importance to understand the functional role of AMF symbionts in food crop nutrition and health, and in plant diversity in natural ecosystems.
DOI: 10.1007/s00572-020-00950-2
PubMed: 32227272
Affiliations:
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analysis.</title><author><name sortKey="Vangelisti, Alberto" sort="Vangelisti, Alberto" uniqKey="Vangelisti A" first="Alberto" last="Vangelisti">Alberto Vangelisti</name><affiliation wicri:level="4"><nlm:affiliation>Department of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Agriculture, Food, and Environment, University of Pisa, Pisa</wicri:regionArea><placeName><settlement type="city">Pise</settlement><region nuts="2">Toscane</region></placeName><orgName type="university">Université de Pise</orgName></affiliation></author><author><name sortKey="Turrini, Alessandra" sort="Turrini, Alessandra" uniqKey="Turrini A" first="Alessandra" last="Turrini">Alessandra Turrini</name><affiliation wicri:level="4"><nlm:affiliation>Department of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy. alessandra.turrini@unipi.it.</nlm:affiliation><country 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Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Agriculture, Food, and Environment, University of Pisa, Pisa</wicri:regionArea><placeName><settlement type="city">Pise</settlement><region nuts="2">Toscane</region></placeName><orgName type="university">Université de Pise</orgName></affiliation></author><author><name sortKey="Cavallini, Andrea" sort="Cavallini, Andrea" uniqKey="Cavallini A" first="Andrea" last="Cavallini">Andrea Cavallini</name><affiliation wicri:level="4"><nlm:affiliation>Department of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Agriculture, Food, and Environment, University of Pisa, Pisa</wicri:regionArea><placeName><settlement type="city">Pise</settlement><region nuts="2">Toscane</region></placeName><orgName type="university">Université de Pise</orgName></affiliation></author></analytic><series><title level="j">Mycorrhiza</title><idno type="eISSN">1432-1890</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ecosystem (MeSH)</term><term>Glomeromycota (MeSH)</term><term>Helianthus (MeSH)</term><term>Mycorrhizae (MeSH)</term><term>Plant Roots (MeSH)</term><term>RNA-Seq (MeSH)</term><term>Symbiosis (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Glomeromycota (MeSH)</term><term>Helianthus (MeSH)</term><term>Mycorhizes (MeSH)</term><term>Racines de plante (MeSH)</term><term>Symbiose (MeSH)</term><term>Écosystème (MeSH)</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Ecosystem</term><term>Glomeromycota</term><term>Helianthus</term><term>Mycorrhizae</term><term>Plant Roots</term><term>RNA-Seq</term><term>Symbiosis</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Glomeromycota</term><term>Helianthus</term><term>Mycorhizes</term><term>Racines de plante</term><term>Symbiose</term><term>Écosystème</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Arbuscular mycorrhizal fungi (AMF) play a fundamental role in plant growth and nutrition in natural and agricultural ecosystems. Despite the importance of such symbionts, the different developmental changes occurring during the AMF life cycle have not been fully elucidated at the molecular level. Here, the RNA-seq approach was used to investigate Rhizoglomus irregulare specific and common transcripts at two different time points of mycorrhizal establishment in Helianthus annuus in vivo. Four days after inoculation, transcripts related to cellular remodeling (actin and tubulin), cellular signaling (calmodulin, serine/threonine protein kinase, 14-3-3 protein, and calcium transporting ATPase), lipid metabolism (fatty acid desaturation, steroid hormone, and glycerophospholipid biosynthesis), and biosynthetic processes were detected. In addition to such transcripts, 16 days after inoculation, expressed genes linked to binding and catalytic activities; ion (K<sup>+</sup>, Ca<sup>2+</sup>, Fe<sup>2+</sup>, Zn<sup>2+</sup>, Mn<sup>2+</sup>, Pi, ammonia), sugar, and lipid transport; and those involved in vacuolar polyphosphate accumulation were found. Knowledge of transcriptomic changes required for symbiosis establishment and performance is of great importance to understand the functional role of AMF symbionts in food crop nutrition and health, and in plant diversity in natural ecosystems.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Automated" Owner="NLM"><PMID Version="1">32227272</PMID><DateCompleted><Year>2020</Year><Month>05</Month><Day>19</Day></DateCompleted><DateRevised><Year>2020</Year><Month>05</Month><Day>19</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-1890</ISSN><JournalIssue CitedMedium="Internet"><Volume>30</Volume><Issue>2-3</Issue><PubDate><Year>2020</Year><Month>May</Month></PubDate></JournalIssue><Title>Mycorrhiza</Title><ISOAbbreviation>Mycorrhiza</ISOAbbreviation></Journal><ArticleTitle>Gene expression in Rhizoglomus irregulare at two different time points of mycorrhiza establishment in Helianthus annuus roots, as revealed by RNA-seq analysis.</ArticleTitle><Pagination><MedlinePgn>373-387</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00572-020-00950-2</ELocationID><Abstract><AbstractText>Arbuscular mycorrhizal fungi (AMF) play a fundamental role in plant growth and nutrition in natural and agricultural ecosystems. Despite the importance of such symbionts, the different developmental changes occurring during the AMF life cycle have not been fully elucidated at the molecular level. Here, the RNA-seq approach was used to investigate Rhizoglomus irregulare specific and common transcripts at two different time points of mycorrhizal establishment in Helianthus annuus in vivo. Four days after inoculation, transcripts related to cellular remodeling (actin and tubulin), cellular signaling (calmodulin, serine/threonine protein kinase, 14-3-3 protein, and calcium transporting ATPase), lipid metabolism (fatty acid desaturation, steroid hormone, and glycerophospholipid biosynthesis), and biosynthetic processes were detected. In addition to such transcripts, 16 days after inoculation, expressed genes linked to binding and catalytic activities; ion (K<sup>+</sup>, Ca<sup>2+</sup>, Fe<sup>2+</sup>, Zn<sup>2+</sup>, Mn<sup>2+</sup>, Pi, ammonia), sugar, and lipid transport; and those involved in vacuolar polyphosphate accumulation were found. Knowledge of transcriptomic changes required for symbiosis establishment and performance is of great importance to understand the functional role of AMF symbionts in food crop nutrition and health, and in plant diversity in natural ecosystems.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Vangelisti</LastName><ForeName>Alberto</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Turrini</LastName><ForeName>Alessandra</ForeName><Initials>A</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-7186-4418</Identifier><AffiliationInfo><Affiliation>Department of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy. alessandra.turrini@unipi.it.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sbrana</LastName><ForeName>Cristiana</ForeName><Initials>C</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-8058-8566</Identifier><AffiliationInfo><Affiliation>CNR, Institute of Agricultural Biology and Biotechnology UOS Pisa, Pisa, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Avio</LastName><ForeName>Luciano</ForeName><Initials>L</Initials><Identifier Source="ORCID">https://orcid.org/0000-0003-2468-3400</Identifier><AffiliationInfo><Affiliation>Department of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Giordani</LastName><ForeName>Tommaso</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Department of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Natali</LastName><ForeName>Lucia</ForeName><Initials>L</Initials><Identifier Source="ORCID">https://orcid.org/0000-0003-3179-5910</Identifier><AffiliationInfo><Affiliation>Department of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Giovannetti</LastName><ForeName>Manuela</ForeName><Initials>M</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-0716-7837</Identifier><AffiliationInfo><Affiliation>Department of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cavallini</LastName><ForeName>Andrea</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Agriculture, Food, and Environment, University of Pisa, Pisa, Italy.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>none</GrantID><Agency>Università di Pisa</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>03</Month><Day>29</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Mycorrhiza</MedlineTA><NlmUniqueID>100955036</NlmUniqueID><ISSNLinking>0940-6360</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D017753" MajorTopicYN="N">Ecosystem</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055137" MajorTopicYN="Y">Glomeromycota</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006368" MajorTopicYN="Y">Helianthus</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D038821" MajorTopicYN="Y">Mycorrhizae</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000081246" MajorTopicYN="N">RNA-Seq</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013559" MajorTopicYN="N">Symbiosis</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Mycorrhizal colonization stages</Keyword><Keyword MajorTopicYN="N">RNA-seq</Keyword><Keyword MajorTopicYN="N">Rhizoglomus irregulare transcriptome</Keyword><Keyword MajorTopicYN="N">Sunflower mycorrhizal symbiosis</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>12</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>03</Month><Day>16</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>4</Month><Day>1</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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